Available data files:
- DataFile1_CT_Anonym.zip
- DataFile1_PT_Anonym.zip
- DataFile1_PT_Anonym_RoiVolume_healthy.nii.zip
- DataFile1_PT_Anonym_RoiVolume_tumor.nii.zip
- DataFile1_PT_Anonym_LIFEx_Texture_Script.txt
- DataFile2_MR_Anonym.zip
- DataFile2_PT_Anonym.zip
- DataFile3_US_Anonym.nii
- DataFile4_US_Anonym.dcm
More sample scripts are available here:
- PT.NII_0_Check_script.txt
- PT.NII_0_Texture_C1_MeanFilter_script.txt
- PT.NII_0_Texture_C1_WaveletFilter_script.txt
- PT.NII_0_Texture_C1_LaplacianFilter_script.txt
- PT.NII_0_Texture_C1_GaussianFilter_script.txt
- PT.NII_0_Texture_C1_scriptAll.txt
- PT.NII_0_Texture_C1_LawsFilter_script.txt
- PT.NII_0_Texture_C1_script.txt
As specified in the license, when using LIFEx to produce results included in a paper, poster or presentation, please cite:
C Nioche, F Orlhac, S Boughdad, S Reuzé, J Goya-Outi, C Robert, C Pellot-Barakat, M Soussan, F Frouin, and I Buvat. LIFEx: a freeware for radiomic feature calculation in multimodality imaging to accelerate advances in the characterization of tumor heterogeneity. Cancer Research 2018; 78(16):4786-4789 (link).
as well as www.lifexsoft.org
Non exhaustive list of systems that have been validated as LIFEx-compatible so far:
DICOM Philips Medical Systems :
- GEMINI (TF TOF 16 , GXL 16)
- Intera 1.5T
- Guardian Body(C)
- Brilliance 16P
Read more: List of systems already validated as LIFEx-compatible
- Main:
- License: here is the LIFEx license you have to agree with before being granted access to the LIFEx software.
- Step-by-step protocols: (>= 7.1.15)
- Texture protocol: here is a demonstration of the protocol. You will also learn how to set the parameters inside the protocol menu. You will learn how to modify the settings and where to find your results.
- MTV protocol: here you will have a detailed explanation on the segmentation methods used inside the protocol and how they are combine. You will also learn how to obtain and save the protocol results. The MTV protocol is also introduced with demonstrations.
Tutorial videos on LIFEx features:
- Series: (>= 7.1.15)
- How to load series of images
- How to get your series metadata, save and convert your series
- How to resample your image series
- Filtering a series: Mean, LoG, Wavelets & Laws
- How to clear a table from a CT series and how to clear VOI from a series
- Basic features for series & how to measure angle and distance
- How to add and remove time points from a time series
- How to do basic operation on a time series (from a series to a parametric image)
- How to level your windows
- How to modify your series relative orientation and position
- Operations on 2 series: merging and basic calculations
- ROI manipulation: (>= 7.1.7)
- How to load, create and save ROI
- Basic edition of ROI
- Advanced features to reformat ROI
- How to change ROI morphology
- Basic measures on ROI and VOI
- How to measure angle and distance in LIFEx
- How to draw 3D ROI
- How to draw 2D ROI
- Basic image segmentation method in LIFEx
- How to find peak volume
- LIFEx advanced segmentation methods
- Handling of several ROI at once: (>= 7.1.7)
Quick demonstrations on LIFEx tools and basic commands :
- Series:
- Loading CTDICOM-RS: here, you will see how to load a CT scan and associated regions saved as RT Struct (v5.10)
- Loading MR DICOM-RS: here, you will see how to load an MR scan and associated regions saved as RT Struct (v5.10)
- Series Loading PET MR: here, you will see how to load a combined PET-MR scan (v5.10)
- Loading DICOM-REG: here, you will see how to use DICOM-REG file for registering two datasets (v5.10)
Software documentation includes written text or presentations that describe the software. They either explain its functionalities or how to use it. Movies (mp4) also show you how to perform a number of tasks with LIFEx. If you'd like more movies to illustrate specific features, let us know !
The version numbers displayed on this page refer to the versions of the application from which the given information applies. If you are unsure, also use the latest version available.